16 References
Almeida-Neto, Mário, and Werner Ulrich. 2011. “A
Straightforward Computational Approach for Measuring
Nestedness Using Quantitative Matrices.” Environmental
Modelling and Software 26 (2): 173–78.
Alonso, D, R S Etienne, and A J McKane. 2006. “The
Merits of Neutral Theory.” Trends
in Ecology & Evolution 21: 451–57.
Anderson, Marti J., Thomas O. Crist, Jonathan M. Chase, et al. 2011.
“Navigating the Multiple Meanings of β Diversity: A Roadmap for
the Practicing Ecologist: Roadmap for Beta
Diversity.” Ecology Letters 14 (1): 19–28. https://doi.org/10.1111/j.1461-0248.2010.01552.x.
Antonovics, Janis, and Helen Miller Alexander. 1992. “Epidemiology
of Anther-Smut Infection of Silene Alba (=
S. Latifolia) Caused by
Ustilago Violacea: Patterns of Spore
Deposition in Experimental Populations.”
Proceedings: Biological Sciences 250 (1328): 157–63. https://www.jstor.org/stable/49961.
Arditi, R., and L. R. Ginzburg. 1989. “Coupling in
Predator-Prey Dynamics:
Ratio-Dependence.” Journal of Theoretical
Biology 139: 311–26.
Arditi, Roger, and Lev R. Ginzburg. 2012. How Species
Interact: Altering the Standard View on
Trophic Ecology. Oxford University Press, Oxford, UK.
Armstrong, R A. 1976. “Fugitive Species:
{\Vphantom}E\vphantom{}xperiments with Fungi
and Some Theoretical Considerations.”
Ecology 57: 953–63.
Arrhenius, O. 1921. “Species and Area.”
Journal of Ecology. https://www.jstor.org/stable/10.2307/2255763.
Barabás, György, Rafael D’Andrea, and Simon Maccracken Stump. 2018.
“Chesson’s Coexistence Theory.” Ecological
Monographs 88 (3): 277–303. https://doi.org/10.1002/ecm.1302.
Barabasi, Albert-Laszlo. 2009. “Scale-Free Networks:
A Decade and Beyond.” Science (New
York, N.Y.) 325 (5939): 412–13.
Beckerman, Andrew, Owen L. Petchey, and Peter J. Morin. 2010.
“Adaptive Foragers and Community
Ecology: Linking Individuals to
Communities and Ecosystems.”
Functional Ecology 24 (1): 1–6.
Becks, L, F M Hilker, H Malchow, K Jurgens, and H Arndt. 2005.
“Experimental Demonstration of Chaos in
a Microbial Food Web.” Nature 435: 1226–29.
Beiler, Kevin J., Suzanne W. Simard, and Daniel M. Durall. 2015.
“Topology of Tree-Mycorrhizal Fungus Interaction
Networks in Xeric and Mesic
Douglas-fir Forests.” Journal of Ecology 103 (3):
616–28.
Bell, Graham. 2000. “The Distribution of
Abundance in Neutral Communities.”
The American Naturalist 155: 606–17.
Berlow, E L, A M Neutel, J E Cohen, et al. 2004. “Interaction
Strengths in Food Webs: Issues
and Opportunities.” Journal of Animal
Ecology 73: 585–98.
Berry, Eric J., David L. Gorchov, Bryan A. Endress, and Martin Henry H.
Stevens. 2008. “Source-Sink Dynamics Within a
Plant Population: The Impact of
Substrate and Herbivory on Palm
Demography.” Population Ecology 50 (1): 63–77. https://doi.org/10.1007/s10144-007-0067-z.
Bever, James D. 2003. “Soil Community Feedback and
the Coexistence of Competitors:
Conceptual Frameworks and Empirical
Tests.” New Phytologist 157 (3): 465–73.
Bjornstad, O. N. 2018. Epidemics: Models and
Data in r. Edited by R. Gentleman, K. Hornik, and G.
Parmigiani. Use r! Series. Springer.
Boenigk, J., C. Metz, K. Jürgens, and H. Arndt. 2002. “Food
Concentration-Dependent Regulation of Food
Selectivity of Interception Feeding Bacterivorous
Nanoflagellates.” Aquatic Microbial Ecology 27:
195–202.
Bolker, B M, S W Pacala, and C Neuhauser. 2003. “Spatial
Dynamics in Model Plant Communities:
{\Vphantom}W\vphantom{}hat Do We Really
Know?” American Naturalist 162: 135–48.
Bolker, B. M. 2008. Ecological Models and
Data in R. Princeton University Press.
Boucher, D. H., S. James, and K. H. Keeler. 1982. “The
Ecology of Mutualism.” Annual
Review of Ecology and Systematics 13: 315–47.
Breininger, David R., and Donna M. Oddy. 2004. “Do Habitat
Potential, Population Density, and Fires
Influence Scrub-Jay Source-Sink Dynamics?” Ecological
Applications 14 (4): 1079–89.
Bronstein, Judith L., ed. 2015. Mutualism. Oxford University
Press, Oxford, UK.
Brown, J H. 1995. Macroecology. The University of Chicago
Press.
Brown, J H, and A Kodric-Brown. 1977. “Turnover Rate
in Insular Biogeography: Effect of
Immigration on Extinction.”
Ecology 58: 445–49.
Brown, James H., James F. Gillooly, Andrew P. Allen, Van M. Savage, and
Geoffrey B. West. 2004. “Toward a Metabolic Theory of
Eology.” Ecology 85 (7): 1771–89. https://doi.org/10.1890/03-9000.
Bshary, Redouan, Andrea Hohner, Karim Ait-el-Djoudi, and Hans Fricke.
2006. “Interspecific Communicative and
Coordinated Hunting Between Groupers and
Giant Moray Eels in the Red Sea.”
PLoS Biology 4 (12): 2393–98. https://www.ncbi.nlm.nih.gov/pubmed/17147471.
Cáceres, Carla E. 1997. “Temporal Variation,
Dormancy, and Coexistence: A Field
Test of the Storage Effect.” Proceedings
of the National Academy of Sciences 94 (17): 9171–75. https://www.ncbi.nlm.nih.gov/pubmed/11038565.
Caswell, H. 1976. “Community Structure: A
Neutral Model Analysis.” Ecological Monographs
46: 327–54.
Caswell, H. 2001b. Matrix Population Models:
Construction, Analysis, and
Interpretation. 2nd ed. Sinauer Associates, Inc.,
Sunderland, MA, USA.
Caswell, H. 2001a. Matrix Population Models:
Construction, Analysis, and
Interpretation. 2nd ed. Sinauer Associates, Inc.,
Sunderland, MA, USA.
Charnov, E. L. 1976. “Optimal Foraging Theory:
The Marginal Value Theorem.” Theoretical
Population Biology 9: 129–36. https://www.ncbi.nlm.nih.gov/pubmed/1273796.
Chaudhary, Vratika, and Madan K. Oli. 2019. “A Critical
Appraisal of Population Viability Analysis.”
Conservation Biology 34 (1): 26–40.
Chen, X, and J E Cohen. 2001. “Global Stability,
Local Stability and Permanence in Model
Food Webs.” Journal of Theoretical Biology 212:
223–35.
Chesson, P L. 1994. “Multispecies Competition in
Variable Environments.” Theoretical Population
Biology 45: 227–76.
Chesson, P L. 2000a. “General Theory of
Competitive Coexistence in Spatially-Varying
Environments.” Theoretical Population Biology 58:
211–37.
Chesson, P L. 2000b. “Mechanisms of Maintenance of
Species Diversity.” Annual Review of Ecology and
Systematics 31: 343–66.
Clark, J S, S LaDeau, and I Ibanez. 2004. “Fecundity of
Trees and the Colonization-Competition
Hypothesis.” ECOLOGICAL MONOGRAPHS 74 (3):
415–42.
Clark, J S, J Mohan, M Dietze, and I Ibanez. 2003. “Coexistence:
{\Vphantom}H\vphantom{}ow to Identify Trophic
Trade-Offs.” Ecology 84 (1): 17–31.
Cohen, J E. 1990. “D{\vphantom}NA\vphantom{}
{\Vphantom}F\vphantom{}ingerprinting for
{\Vphantom}F\vphantom{}orensic
{\Vphantom}I\vphantom{}dentification -
{\Vphantom}P\vphantom{}otential
{\Vphantom}E\vphantom{}ffects on
{\Vphantom}D\vphantom{}ata
{\Vphantom}I\vphantom{}nterpretation of
{\Vphantom}S\vphantom{}ubpopulation
{\Vphantom}H\vphantom{}eterogeneity and
{\Vphantom}B\vphantom{}and
{\Vphantom}N\vphantom{}umber
{\Vphantom}V\vphantom{}ariability.” American
Journal of Human Genetics 46 (2): 358–68.
Cohen, J E, C M Newman, A E Cohen, O L Petchey, and A Gonzalez. 1999.
“Spectral Mimicry: A Method of
Synthesizing Matching Time Series with
Different {\Vphantom}F\vphantom{}ourier
Spectra.” Circuits, Systems and Signal
Processing 18: 431–42.
Collins, S L, and S M Glenn. 1991. “Importance of
Spatial and Temporal Dynamics in Species
Regional Abundance and Distribution.”
Ecology 72: 654–64.
Connell, J H. 1978. “Diversity in Tropical Rain
Forests and Coral Reefs.” Science (New
York, N.Y.) 199: 1302–10.
Constantino, R F, J M Cushing, B Dennis, and R A Desharnais. 1995.
“Experimentally Induced Transitions in the
Dynamic Behaviour of Insect
Populations.” Nature 375: 227–30.
Craine, J M. 2005. “Reconciling Plant Strategy
Theories of Grime and Tilman.”
Journal of Ecology 93: 1041–52. https://www.ncbi.nlm.nih.gov/pubmed/3677.
Crawley, \relax MJ, and \relax JE Harral.
2001. “Scale Dependence in Plant
Biodiversity.” Science (New York, N.Y.) 291
(5505): 864–68. https://doi.org/10.1126/science.291.5505.864.
Crist, T O, and J A Veech. 2006. “Additive
Partitioning of Rarefaction Curves and
Species-Area Relationships:
{\Vphantom}U\vphantom{}nifying Alpha-,
Beta- and Gamma-Diversity with Sample
Size and Habitat Area.” Ecology
Letters 9: 923–32.
Crist, T O, J A Veech, J C Gering, and K S Summerville. 2003.
“Partitioning Species Diversity Across
Landscapes and Regions: A Hierarchical
Analysis of Alpha, Beta, and
Gamma Diversity.” American Naturalist 162:
734–43.
Crouse, D T, L B Crowder, and H Caswell. 1987. “A
Stage-Based Population Model for Loggerhead Sea
Turtles and Implications for
Conservation.” Ecology 68: 1412–23.
Crow, James F., and M. Kimura. 1970. An Introduction to
Population Genetic Theory. Harper & Row
Publishers.
Cruz, Marcelino de la. 2019. Rramas: Matrix Population
Models. Manual.
Dennis, Brian, José Miguel Ponciano, Subhash R. Lele, Mark L. Taper, and
David F. Staples. 2006. “Estimating Density Dependence, Process
Noise, and Observation Error.” Ecological Monographs 76
(3): 323–41. https://doi.org/10.1890/0012-9615(2006)76[323:EDDPNA]2.0.CO;2.
Dononvan, T. M., F. R. Thompson III, J. Faaborg, and J. R. Probst. 1995.
“Reproductive Success of Migratory Birds
in Habitat Sources and Sinks.”
Conservation Biology 9: 1380–95.
Drake, J. M., and A. M. Kramer. 2011. “Allee
Effects.” Nature Education Knowledge 3
(10): 2.
Dunne, J A, R J Williams, and N D Martinez. 2002. “Food-Web
Structure and Network Theory: The Role
of Connectance and Size.”
Proceedings of the National Academy of Sciences of the United States
of America 99: 12917–22.
Ellner, S P, and J Guckenheimer. 2006. Dynamic Models
in Biology. Princeton University Press, Princeton, NJ.
Ellner, S P, and P Turchin. 2005. “When Can Noise Induce
Chaos and Why Does It Matter:
{\Vphantom}A\vphantom{} Critique.”
Oikos (Copenhagen, Denmark) 111: 620–31. https://www.ncbi.nlm.nih.gov/pubmed/6669.
Ellner, S. P. 2009. “Lecture Notes,
BioEE 4600 Theoretical Ecology , Cornell
University.” Unpublished manuscript.
Ellner, Stephen P., Dylan Z. Childs, and Mark Rees. 2016.
Data-Driven Modelling of Structured
Populations: A Practical Guide to the Integral
Projection Model. Lecture Notes on
Matehematical Modelling in the Life Sciences.
Springer International Publishing.
Ellner, Stephen P., Robin E. Snyder, Peter B. Adler, and Giles Hooker.
2019. “An Expanded Modern Coexistence Theory for
Empirical Applications.” Ecology Letters 22
(1): 3–18. https://doi.org/10.1111/ele.13159.
Emlen, J. M. 1966. “The Role of Time and
Energy in Food Preference.” The
American Naturalist 100: 611–17.
Etienne, Rampal S. 2007. “A Neutral Sampling Formula
for Multiple Samples and an ’Exact’ Test of
Neutrality.” Ecology Letters 10 (7):
608–18. https://www.ncbi.nlm.nih.gov/pubmed/17542939.
Etienne, Rampal S. 2009. “Improved Estimation of
Neutral Model Parameters for Multiple Samples
with Different Degrees of Dispersal
Limitation.” Ecology 90 (3): 847–52. https://www.ncbi.nlm.nih.gov/pubmed/19341153.
Ewens, W J. 2004. Mathematical Population Genetics, i.
Theoretical Introduction. 2nd ed. Edited by S S
Antman, J J Marsden, L Sirovich, and S Wiggins. Vol. 27.
Interdisciplinary Applied Mathematics. Springer, New York.
Facelli, J M, P Chesson, and N Barnes. 2005. “Differences in
Seed Biology of Annual Plants in Arid
Lands: A Key Ingredient of the Storage
Effect.” Ecology 86: 2998–3006.
Fisher, R A, A S Corbet, and C B Williams. 1943. “The
Relation Between the Number of
Species and the Number of
Individuals in a Random Sample of an
Animal Population.” Jounral of Animal
Ecology 12: 42–58.
Gillooly, James F. 2000. Effect of Body Size and
Temperature on Generation Time in
Zooplankton. 22 (2): 241–51.
Glazier, Douglas S. 2018. “Rediscovering and Reviving Old
Observations and Explanations of Metabolic
Scaling in Living Systems.” Systems
6 (4).
Goettsch, Bárbara, Craig Hilton-Taylor, Gabriela Cruz-Piñón, et al.
2015. “High Proportion of Cactus Species
Threatened with Extinction.” Nature
Plants 1 (10): 15142. https://www.ncbi.nlm.nih.gov/pubmed/27251394.
Gotelli, N G, and W G Kelley. 1993. “A General Model
of Metapopulation Dynamics.” Oikos (Copenhagen,
Denmark) 68: 36–44.
Gotelli, N J. 1991. “Metapopulation Models: The
Rescue Effect, the Propagule Rain, and the
Core-Satellite Hypothesis.” The American
Naturalist 138: 768–76.
Gotelli, N J. 2001. A {\Vphantom}P\vphantom{}rimer of
{\Vphantom}E\vphantom{}cology. 3rd ed. Sinauer
Associates, Inc.
Gotelli, N J, and R K Colwell. 2001. “Quantifying
Biodiversity: Procedures and
Pitfalls in the Measurement and
Comparison of Species Richness.”
Ecology Letters 4: 379–91.
Gotelli, N J, and G R Graves. 1996. Null
{\Vphantom}M\vphantom{}odels in
{\Vphantom}E\vphantom{}cology. Smithsonian Institution
Press.
Gotelli, N J, and B J McGill. 2006. “Null Versus Neutral
Models: What’s the Difference?”
Ecography 29: 793–800.
Green, J L, and J B Plotkin. 2007. “A Statistical
Theory for Sampling Species Abundances.”
Ecology Letters 10: 1037–45.
Gross, K L, and P A Werner. 1982. “Colonizing
Abilities of ‘Biennial’
Plant Species in Relation to Ground
Cover: Implications for Their
Distriubtions in a Successional Sere.”
Ecology 63: 921–31.
Hairston Sr., N G. 1991. Ecological Experiments:
Purpose, Design, and
Execution. Cambridge Studies in
Ecology. Cambridge University Press.
Halley, J M. 1996. “Ecology, Evolution and
1/f-Noise.” Trends in Ecology &
Evolution 11: 33–37.
Hambäack, P. A., K. S. Summerville, I. Steffan-Dewenter, J. Krauss, G.
Englund, and T. O. Crist. 2007. “Habitat
Specialization, Body Size, and Family
Identity Explain Lepidopteran Density-Area Relationships in a
Cross-Continental Comparison.” Proceeding of the
National Academy of Sciences, USA 104: 8368–73.
Hankin, Robin K S. 2007. Journal of Statistical
Software. 22 (12): 1–15.
Hanski, I. 1982. “Dynamics of Regional Distribution:
{\Vphantom}T\vphantom{}he Core and
Satellite Species Hypothesis.” Oikos
(Copenhagen, Denmark) 38: 210–21.
Hanski, I. 1994. “A Practical Model of
Metapopulation Dynamics.” Journal of Animal
Ecology 63: 151–62.
Hanski, \relax Iikka. 1994.
“Patch-Occupancy Dynamics in Fragmented
Landscapes.” Trends in Ecology & Evolution 9
(4): 131–35. https://www.ncbi.nlm.nih.gov/pubmed/21236796.
Harte, John, and Erica A. Newman. 2014. “Maximum Information
Entropy: A Foundation for Ecological
Theory.” Trends in Ecology & Evolution 29
(7): 384–89. https://doi.org/10.1016/j.tree.2014.04.009.
Harte, John, Kaito Umemura, and Micah Brush. 2021.
“DynaMETE: A Hybrid
MaxEnt-plus-mechanism Theory of Dynamic
Macroecology.” ECOLOGY LETTERS 24 (5): 935–49. https://doi.org/10.1111/ele.13714.
Harte, J, T Zillio, E Conlisk, and A B Smith. 2008. “Maximum
Entropy and the State-Variable Approach to
Macroecology.” Ecology 89: 2700–2711.
Hastings, A. 1980. “Disturbance, Coexistence,
History and Competition for
Space.” Theoretical Population Biology 18:
363–73.
Hastings, A. 2004. “Transients: The Key to
Long-Term Ecological Understanding?” Trends in
Ecology and Evolution 19: 39–45.
Hastings, A. 2011. Single Species Population Dynamics
and Its Theoretical Underpinnings. Edited by S. M.
Scheiner and M. R. Willig. University of Chicago Press.
Helm, Aveliina, Ilkka Hanski, and Meelis Pärtel. 2006. “Slow
Response of Plant Species Richness to
Habitat Loss and Fragmentation.”
Ecology Letters 9 (1): 72–77. https://www.ncbi.nlm.nih.gov/pubmed/16958870.
HilleRisLambers, J., P. B. Adler, W. S. Harpole, J. M. Levine, and M. M.
Mayfield. 2012. “Rethinking Community Assembly
Through the Lens of Coexistence
Theory.” Annual Review of Ecology, Evolution, and
Systematics 43 (1): 227–48. https://doi.org/10.1146/annurev-ecolsys-110411-160411.
Holland, J. Nathaniel, and Donald L. Deangelis. 2010. “A
Consumer-Resource Approach to the Density-Dependent
Population Dynamics of Mutualism.”
Ecology 91 (5): 1286–95. https://www.ncbi.nlm.nih.gov/pubmed/20503862.
Holling, C. S. 1959. “Some Characteristics of
Simple Types of Predation and
Parasitism.” Canadian Entomologist 91: 385.
Holt, R. D. 2011. Natural Enemy-Victim Interactions:
Do We Have a Unified Theory Yet? Edited
by S. M. Scheiner and M. R. Waide. University of Chicago Press.
Horn, H S, and R H MacArthur. 1972. “Competition Among
Fugitive Species in a Harlequin
Environment.” Ecology 53: 749–52.
Hubbell, S P. 2001. A {\Vphantom}U\vphantom{}nified
{\Vphantom}T\vphantom{}heory of
{\Vphantom}B\vphantom{}iodiversity and
{\Vphantom}B\vphantom{}iogeography. Monographs in
Population Biology. Princeton University Press.
Hurtt, George C., and Stephen W. Pacala. 1995. “The
Consequences of Recruitment Limitation:
Reconciling Chance, History and
Competitive Differences Between
Plants.” Journal of Theoretical Biology 176
(1): 1–12. https://www.ncbi.nlm.nih.gov/pubmed/128.
Hutchinson, G E. 1978. An
{\Vphantom}I\vphantom{}ntroduction to
{\Vphantom}P\vphantom{}opulation
{\Vphantom}E\vphantom{}cology. Yale University Press.
Huxel, G R, and K McCann. 1998. “Food Web Stability:
The Influence of Trophic Flows Across
Habitats.” American Naturalist 152: 460–69.
Jabot, F, and J Chave. 2009. “Inferring the
Parameters of the Neutral Theory of
Biodiversity Using Phylogenetic Information, and
Implications for Tropical Forests.”
Ecology Letters 12: 239–48.
Juliano, S A. 2001. “Nonlinear Curve Fitting:
Predation and Functional Response
Curves.” In Design and Analysis of
Ecological Experiments, edited by S M Scheiner and J
Gurevitch. Oxford University Press.
Kareiva, P, and U Wennergren. 1995. “Connecting Landscape
Patterns to Ecosystem and Population
Processes.” Nature 373: 299–302.
Kelly, C K, and M G Bowler. 2002. “Coexistence and Relative
Abundance in Forest Trees.” Nature
417: 437–40. https://www.ncbi.nlm.nih.gov/pubmed/12024212.
Kendall, B E, J Prendergast, and O N Bjornstad. 1998. “The
Macroecology of Population Dynamics:
{\Vphantom}T\vphantom{}axonomic and Biogeographic
Patterns in Population Cycles.” Ecology
Letters 1: 160–64.
Kendall, Bruce E., Masami Fujiwara, Jasmin Diaz-Lopez, Sandra Schneider,
Jakob Voigt, and Sören Wiesner. 2019. “Persistent
Problems in the Construction of Matrix
Population Models.” Ecological Modelling 406
(August): 33–43. https://doi.org/10.1016/j.ecolmodel.2019.03.011.
Kermack, W O, and W G McCormick. 1927. “A
Contribution to the Mathematical Theory of
Epidemics.” Proceedings of the Royal Society,
Series A 115: 700–721.
Keylock, C J. 2005. “Simpson Diversity and the
Shannon-Wiener Index as Special Cases of a
Generalized Entropy.” Oikos (Copenhagen,
Denmark) 109: 203–7.
Kingsland, S E. 1985. Modeling Nature. University
of Chicago Press.
Kleiber, M. 1932. “Body Size and
Metabolism.” Hilgardia, 315–32.
Krebs, C J, S Boutin, R Boonstra, et al. 1995. “Impact of
Food and Predation on the Snowshoe Hare
Cycle.” Science (New York, N.Y.) 269: 1112–15.
Lande, R. 1987. “Extinction Thresholds in
Demographic Models of Territorial
Populations.” American Naturalist 130: 624–35.
Lande, R. 1996. “Statistics and Partitioning of
Species Diversity, and Similarity Among
Multiple Communities.” Oikos (Copenhagen,
Denmark) 76: 5–13.
Lande, R, P J DeVries, and T R Walla. 2000. “When Species
Accumulation Curves Intersect:
{\Vphantom}I\vphantom{}mplications for Ranking
Diversity Using Small Samples.” Oikos (Copenhagen,
Denmark) 89: 601–5.
Lande, Russell. 1988. “Demographic Models of the
Northern Spotted Owl (Strix Occidentalis
Caurina).” Oecologia 75 (4): 601–7.
Legrand, Delphine, Julien Cote, Emanuel A. Fronhofer, et al. 2017.
“Eco-Evolutionary Dynamics in Fragmented
Landscapes.” Ecography 40 (1): 9–25.
Lehman, C L, and D Tilman. 1997. “Competition in Spatial
Habitats.” In Spatial Ecology: The
Role of Space in Population Dynamics
and Interspecific Interactions, edited by D Tilman and
P Kareiva. Princeton University Press.
Leibold, M A, M Holyoak, N Mouquet, et al. 2004. “The
Metacommunity Concept: {\Vphantom}A\vphantom{}
Framework for Multi-Scale Community
Ecology.” Ecology Letters 7: 601–13.
Leibold, M A, and M A McPeek. 2006. “Coexistence of the
Niche and Neutral Perspectives in
Community Ecology.” Ecology 87: 1399–410.
Leigh E. G., \relax Jr. 1999. Tropical
Forest Ecology: A View from Barro
Colorado Island. Oxford University Press, Oxford, UK.
Levin, S A, J E Cohen, and A Hastings. 1984. “Dispersal
Strategies in a Patchy Environment.”
Theoretical Population Biology 26: 165–91.
Levine, Jonathan M, and Janneke HilleRisLambers. 2009. “The
Importance of Niches for the
Maintenance of Species Diversity.”
Nature 461 (7261): 254–57. https://www.ncbi.nlm.nih.gov/pubmed/19675568.
Levins, R. 1969. “Some Demographic and Genetic
Consequences of Environmental Heterogeneity for
Biological Control.” Bulletin of the
Entomological Society of America 15: 237–40.
Levins, R, and D Culver. 1971. “Regional Coexistence
of Species and Competition Between Rare
Species.” Proceeding of the National Academy of
Sciences, U.S.A. 68: 1246–48. https://www.ncbi.nlm.nih.gov/pubmed/16591932.
Lindborg, Regina, and Ove Eriksson. 2004. “Historical
Landscape Connectivity Affects Present Plant Species
Diversity.” Ecology 85 (7): 1840–45. https://www.ncbi.nlm.nih.gov/pubmed/273.
Loreau, M, N Mouquet, and R D Holt. 2003.
“Meta-Ecosystems: A Theoretical
Framework for a Spatial Ecosystem Ecology.”
Ecology Letters 6: 673–79.
MacArthur, R H. 1957. “On the Relative Abundance of
Bird Species.” Proceedings of the National
Academy of Sciences of the United States of America 43: 293–95.
MacArthur, R H. 1962. “Some Generalized Theorems of
Natural Selection.” Proceedings of the National
Academy of Sciences, USA 48: 1893–97. https://www.ncbi.nlm.nih.gov/pubmed/16591013.
MacArthur, R H. 1972. Geographical Ecology:
Patterns in the Distribution of
Species. Harper & Row.
MacArthur, R H, and E R Pianka. 1966. “On Optimal Use
of a Patchy Environment.” The American
Naturalist 100: 603–9.
MacArthur, R. H., and E. O. Wilson. 1967. The Theory of
Island Biogeography. Monographs in Population
Biology. Princeton University Press.
MacArthur, Robert H., and Edward O. Wilson. 1963. “An
Equilibrium Theory of Insular
Zoogeography.” Evolution 17 (4): 373. https://doi.org/10.2307/2407089.
Magurran, A E. 2004. Measuring Biological
Diversity. Princeton University Press.
Marquet, Pablo A., Andrew P. Allen, James H. Brown, et al. 2014.
“On Theory in Ecology.”
BioScience 64 (8): 701–10.
May, R M. 1973. Stability and Complexity in Model
Ecosystems. Vol. 6. Monographs in Population
Biology. Princeton University Press.
May, R M. 1978. “Host-Parasitoid Systems in
Patchy Environments: A Phenomenological
Model.” Journal of Animal Ecology 47: 833–44.
May, R M. 2006. “Network Structure and the
Biology of Populations.” Trends in
Ecology & Evolution 21: 394–99.
May, R. M. 1972. “Will Large Complex Systems Be
Stable?” Nature 238: 413–14.
May, R. M. 1975. “Patterns of Species
Abundance.” In Ecology and Evolution of
Communities, edited by M. L. Cody and J. M. Diamond.
Harvard University Press.
May, Robert M. 1974. “Biological Populations with
Nonoverlapping Generations: Stable Points,
Stable Cycles, and Chaos.” Science
(New York, N.Y.) 186: 645–47.
McCallum, Hamish, Nigel Barlow, and Jim Hone. 2001. “How
Should Pathogen Transmission Be Modelled?”
Trends in Ecology and Evolution 16 (6): 295–300. https://www.ncbi.nlm.nih.gov/pubmed/11369107.
McCann, K, A Hastings, and G R Huxel. 1998. “Weak Trophic
Interactions and the Balance of
Nature.” Nature 395: 794–98.
McPeek, M. A. Mark A., and Robert D. R. D. Holt. 1992. “The
Evolution of Dispersal in
Spatially and Temporally Varying
Environments.” In American Naturalist, No. 6,
vol. 140. https://www.jstor.org/stable/10.2307/2462931.
Merow, Cory, Johan P. Dahlgren, C. Jessica E Metcalf, et al. 2014.
“Advancing Population Ecology with Integral
Projection Models: A Practical Guide.”
Methods in Ecology and Evolution 5 (2): 99–110.
Metcalf, C. J. E., S. M. McMahon, R. Salguero-Gomez, E. Jongejans, and
C. Merow. 2014. IPMpack: Builds and
Analyses Integral Projection Models
(IPMs). Manual.
Miller, T E. 1994. “Direct and Indirect Interactions
in an Early Old-Field Plant Community.” The
American Naturalist 143: 1007–25.
Morin, P J. 1999. Community Ecology. Blackwell
Science, Inc.
Morlon, Hélène, George Chuyong, Richard Condit, et al. 2008. “A
General Framework for the Distance-Decay of
Similarity in Ecological Communities.”
Ecology Letters 11 (9): 904–17. https://www.ncbi.nlm.nih.gov/pubmed/18494792.
Motomura, I. 1932. “A Statistical Treatment of
Associations [in
{\Vphantom}J\vphantom{}apanese].” Japanese
Journal of Zoology 44: 379–83.
Munoz, François, Matthias Grenié, Pierre Denelle, et al. 2018.
“\emphEcolottery :
Simulating and Assessing Community Assembly
with Environmental Filtering and Neutral
Dynamics in R.” Methods in Ecology and
Evolution 9 (3): 693–703. https://doi.org/10.1111/2041-210X.12918.
Nee, S. 2005. “The Neutral Theory of
Biodiversity: Do the Numbers Add
Up?” Functional Ecology 19 (1): 173–76.
Nee, S, and R M May. 1992. “Dynamics of
Metapopulations: Habitat Destruction and
Competitive Coexistence.” Journal of Animal
Ecology 61: 37–40.
Neubert, M G, and H Caswell. 1997. “Alternatives to
Resilience for Measuring the
Responses of Ecological Systems to
Perturbations.” Ecology 78: 653–65.
Nicholson, A J, and V A Bailey. 1935. “The Balance of
Animal Populations -
{\Vphantom}P\vphantom{}art
{\Vphantom}I\vphantom{}.” Proceedings of the
Zoological Society of London, 551–98.
Niklas, Karl J., and Brian J. Enquist. 2001. “Invariant
Scaling Relationships for Interspecific Plant Biomass
Production Rates and Body Size.”
Proceedings of the National Academy of Sciences of the United States
of America 98 (5): 2922–27. https://www.ncbi.nlm.nih.gov/pubmed/11226342.
O’Neill, \relax RV, \relax DL De Angelis, \relax JB
Waide, and \relax TFH Allen. 1986. A Hierarchical
Concept of Ecosystems. Vol. 23. Monographs in
Population Biology. Princeton University Press, Princeton,
New Jersey, USA.
Oksanen, Jari, Gavin L. Simpson, F. Guillaume Blanchet, et al. 2026.
Vegan: Community Ecology Package. Manual. https://doi.org/10.32614/CRAN.package.vegan.
Pacala, S W. 1997. “Dynamics of Plant
Communities.” In Plant Ecology,
edited by M J Crawley. Blackwell Science, Ltd.
Pacala, S W, and M Rees. 1998. “Models Suggesting Field
Experiments to Test Two Hypotheses Explaining Successional
Diversity.” The American Naturalist 152: 729–37.
Pacala, S. W., M. P. Hassell, and R. M. May. 1990.
“Host-Parasitoid Associations in Patchy
Environments.” Nature 344 (6262): 150–53. https://www.ncbi.nlm.nih.gov/pubmed/2103109.
Pardini, Eleanor A., John M. Drake, Jonathan M. Chase, and Tiffany M.
Knight. 2009. “Complex Population Dynamics and
Control of the Invasive Biennial Alliaria
Petiolata (Garlic Mustard).” ECOLOGICAL
APPLICATIONS 19 (2): 387–97.
Peters, R H. 1988. “Some General Problems in
Ecology Illustrated by Food Web
Theory.” Ecology 69: 1673–76.
Petzoldt, T. 2003. “R as a Simulation Platform in
Ecological Modelling.” R News 3: 8–16.
Pimm, S L, and J H Lawton. 1977. “Number of Trophic
Levels in Ecological Communities.”
Nature 268: 329 331.
Pimm, S. L., and J. H. Lawton. 1978. “Feeding on More
Than One Trophic Level.” Nature 275 (5680):
542–44. https://doi.org/10.1038/275542a0.
Platt, W, and I Weis. 1977. “Resource Partitioning
and Competition Within a Guild of
Fugitive Prairie Plants.” The American
Naturalist 111: 479–513.
Polis, G A. 1991. “Complex Trophic Interactions in
Deserts: An Empirical Critique of Food
Web Ecology.” The American Naturalist 138:
123–55.
Post, D M. 2002. “The Long and Short of
Food-Chain Length.” Trends in Ecology &
Evolution 17: 269–77.
Preston, F W. 1948. “The Commonness, and
Rarity, of Species.” Ecology
29: 254–83.
Preston, F W. 1960. “Time and Space and
Variation of Variation.”
Ecology 41: 611–27.
Preston, F W. 1962. “The Canonical Distribution of
Commonness and Rarity: Part
{\Vphantom}I\vphantom{}.” Ecology 43:
185–215.
Pulliam, H R. 1988. “Sources, Sinks, and
Population Regulation.” The American
Naturalist 132: 652–61.
Rabinowitz, D, and J K Rapp. 1981. “Dispersal
Abilities of Seven Sparse and Common
Grasses from a {\Vphantom}M\vphantom{}issouri
Prairie.” American Journal of Botany 68:
616–24.
Robertson, B. A., J. S. Rehage, and A. Sih. 2013. “Ecological
Novelty and the Emergence of
Evolutionary Traps.” Trends in Ecology &
Evolution 28: 552–60.
Robinson, Scott K., Frank R. Thompson, Therese M. Donovan, Donald R.
Whitehead, and John Faaborg. 1995. “Regional Forest
Fragmentation and the Nesting Success of
Migratory Birds.” Science 267 (5206):
1987–90. https://doi.org/10.1126/science.267.5206.1987.
Rose, Kevin C., Rose A. Graves, Winslow D. Hansen, et al. 2017.
“Historical Foundations and Future
Directions in Macrosystems Ecology.”
Ecology Letters 20 (2): 147–57. https://doi.org/10.1111/ele.12717.
Rosenzweig, M L. 1971. “Paradox of Enrichment:
Destabilization of Exploitation Ecosystems in
Ecological Time.” Science (New York, N.Y.)
171: 385–87.
Rosenzweig, M L. 1995. Species
{\Vphantom}D\vphantom{}iversity in
{\Vphantom}S\vphantom{}pace and
{\Vphantom}T\vphantom{}ime. Cambridge University
Press.
Rosenzweig, M L, and R H MacArthur. 1963. “Graphical
Representation and Stability Conditions of
Predator-Prey Interactions.” American
Naturalist 97: 209–23.
Roughgarden, J. 1998. Primer of
{\Vphantom}E\vphantom{}cological
{\Vphantom}T\vphantom{}heory. Prentice-Hall, Inc.
Roughgarden, J, and F Smith. 1996. “Why Fisheries
Collapse and What to Do about
It.” Proceedings of the National Academy of
Sciences, U.S.A. 93 (May): 5078–83.
Sale, P F. 1977. “The Maintenance of High
Diversity in Coral Reef Fish Communities.”
The American Naturalist 111: 337–59.
Scheiner, S. M. 2003. “Six Types of
Species-Area Curves.” Global Ecology and
Biogeography 12 (6): 441–47. https://doi.org/10.1046/j.1466-822X.2003.00061.x.
Scheiner, S. M., and M. R. Willig, eds. 2011. The
Theory of Ecology. University of Chicago
Press, Chicago.
Scheiner, Samuel M. 2010. “Toward a Conceptual
Framework for Biology.” Quarterly Review
of Biology 85 (3): 293–318.
Shaffer, Mark L. 1981. “Minimum Population Sizes for
Species Conservation.” BioScience 31 (2):
131–34. https://doi.org/10.2307/1308256.
Shmida, A, and S P Ellner. 1984. “Coexistance of Plant
Species with Similar Niches.”
Vegetatio 58: 29–55.
Shumway, Robert H., and David S. Stoffer. 2019. Time
Series: A Data Analysis Approach. CRC
Press, Taylor & Francis Group, Boca Raton, FL.
Sibly, R M, D Barker, M C Denham, J Hone, and M Pagel. 2005. “On
the Regulation of Populations of
Mammals, Birds, Fish, and
Insects.” Science (New York, N.Y.) 309:
607–10.
Sih, A. 2011. Foraging Theory. Edited by S. M.
Scheiner and M. R. Willig. University of Chicago Press.
Skellam, J. G. 1951. “Random Dispersal in Theoretical
Populations.” Biometrika 38 (1–2): 196–218. https://doi.org/10.1093/biomet/38.1-2.196.
Stenseth, N. C., W. Falck, O. N. Bjornstad, and C. J. Krebs. 1997.
“Population Regulation in Snowshoe Hare
and Canadian Lynx: Asymmetric Food Web
Configurations Between Hare and
Lynx.” Proceedings of the National Academy of
Sciences 94 (10): 5147–52. https://www.ncbi.nlm.nih.gov/pubmed/9144205.
Stephens, D W, and J R Krebs. 1986. Foraging
Theory. Edited by J. R. Krebs and T. H. Clutton-Brock.
Monographs in Behavior and Ecology. Princeton
University Press.
Sterner, R. W., J. J. Elser, and P. M. Vitousek. 2002. Ecological
Stoichiometry: The Biology of
Elements from Molecules to the
Biosphere. Princeton University Press, Princeton, New
Jersey, USA.
Stott, Iain, Dave Hodgson, and Stuart Townley. 2018. Popdemo:
Demographic Modelling Using Projection Matrices.
Manual.
Stubben, Chris J., and Brook G. Milligan. 2007. “Estimating and
Analyzing Demographic Models Using the Popbio
Package in r.” Journal of Statistical Software 22
(11).
Sugihara, G. 1980. “Minimal Comunity
Structure:An Explanation of Species Abundance
Patterns.” The American Naturalist 116: 770–87.
Summerville, K S, and T O Crist. 2003. “Determinants of
Lepidopteran Community Composition and Species
Diversity in Eastern Deciduous Forests:
Roles of Season, Eco- Region and
Patch Size.” Oikos (Copenhagen, Denmark)
100: 134–48.
Summerville, K S, and T O Crist. 2004. “Contrasting
Effects of Habitat Quantity and
Quality on Moth Communities in
Fragmented Landscapes.” Ecography 27: 3–12.
Thébault, Elisa, and Colin Fontaine. 2010. “Stability of
Ecological Communities and the Architecture of
Mutualistic and Trophic Networks.”
Science (New York, N.Y.) 329 (5993): 853–56. https://www.ncbi.nlm.nih.gov/pubmed/20705861.
Tilman, D. 1982. Resource
{\Vphantom}C\vphantom{}ompetition and
{\Vphantom}C\vphantom{}ommunity
{\Vphantom}S\vphantom{}tructure. Monographs in
Population Biology. Princeton University Press.
Tilman, D. 1988. Plant {\Vphantom}S\vphantom{}trategies
and the Dynamics and Structure of Plant
Communities. Vol. 26. Monographs in Population
Biology. Princeton University Press.
Tilman, D. 1994. “Competition and Biodiversity in Spatially
Structured Habitats.” Ecology 75 (1): 2–16.
Tilman, David. 2007. “Resource Competition and
Plant Traits: A Response to
Craine Et Al. 2005.” Journal of Ecology 95:
231–34.
Tilman, D, and J A Downing. 1994. “Biodiversity and
Stability in Grasslands.”
Nature 367: 363–65.
Tokeshi, M. 1999. Species Coexistence:
Ecological and Evolutionary Perspectives.
Blackwell Science, Ltd.
Tokeshi, Mutsunori. 1990. “Niche Apportionment or
Random Assortment: Species Abundance Patterns
Revisited.��� Journal of Animal Ecology 59 (3):
1129–46. https://www.ncbi.nlm.nih.gov/pubmed/19009.
Vandermeer, J. 2006. “Oscillating Populations and
Biodiversity Maintenance.” Bioscience 56:
967–75.
Vellend, Mark. 2017. The Theory of Ecological
Communities. Vol. 57. Monographs in Population
Biology. Princeton University Press, Princeton, New Jersey, USA.
Volkov, I, J R Banavar, F L He, S P Hubbell, and A Maritan. 2005.
“Density Dependence Explains Tree Species Abundance
and Diversity in Tropical Forests.”
Nature 438: 658–61.
Volkov, I, J R Banavar, S P Hubbell, and A Maritan. 2003. “Neutral
Theory and Relative Species Abundance in
Ecology.” Nature 424: 1035–37.
Volkov, I, J R Banavar, S P Hubbell, and A Maritan. 2007.
“Patterns of Relative Species Abundance in
Rainforests and Coral Reefs.”
Nature 450: 45–49.
Vonesh, J R, and O de la Cruz. 2002. “Complex Life
Cycles and Density Dependence:
Assessing the Contribution of Egg
Mortality to Amphibian Declines.”
Oecologia 133 (3): 325–33.
Watkinson, A. R. 1980. “Density-Dependence in
Single-Species Populations of Plants.”
Journal of Theoretical Biology 83 (2): 345–57. https://doi.org/10.1016/0022-5193(80)90297-0.
Wedin, D, and D Tilman. 1993. “Competition Among
Grasses Along a Nitrogen Gradient:
Initial Conditions and Mechanisms of
Competition.” Ecological Monographs 63:
199–229.
Wenny, D G, and D J Levey. 1998. “Directed Seed
Dispersal by Bellbirds in a Tropical Cloud
Forest.” Proceedings of the National Academy of
Sciences of the United States of America 95 (11): 6204–7. https://www.ncbi.nlm.nih.gov/pubmed/9600942.
West, G B, J H Brown, and B J Enquist. 1997. “A General
Model for the Origin of Allometric Scaling
Laws in Biology.” Science (New York,
N.Y.) 276: 122–26.
Whittaker, R H. 1960. “Vegetation of the Siskiyou
Mountains, Oregon and
California.” Ecoloigcal Monographs 30:
279–338.
Whittaker, Robert J., Jose Maria Fernandez-Palacios, Thomas J. Matthews,
Michael K. Borregaard, and Kostas A. Triantis. 2017. “Island
Biogeography: Taking the Long
View of Nature’s Laboratories.”
Science (New York, N.Y.) 357 (6354): 885+. https://doi.org/10.1126/science.aam8326.
Wiens, J A. 1989. “Spatial Scaling in
Ecology.” Functional Ecology 3: 385–97.
Williams, Richard J., and Neo D. Martinez. 2000. “Simple
Rules Yield Complex Food Webs.” Nature 404
(6774): 180–83. https://www.ncbi.nlm.nih.gov/pubmed/10724169.
Wilson, S D, and D Tilman. 1995. “Competitive
Responses of 8 Old-Field Plant-Species in 4
Environments.” Ecology 76: 1169–80.
Wootton, J T. 2005. “Field Parameterization and
Experimental Test of the Neutral Theory of
Biodiversity.” Nature 433: 309–12.